These keto mini cheesecakes are rich, creamy, and surprisingly easy to make. They’re perfect when you want dessert without the sugar crash or a sink full of dishes. Each bite tastes like classic cheesecake—smooth, tangy, and satisfying—just in a portion-friendly size.
Make a batch once, and you’ll have a ready-to-go treat for busy nights, parties, or a sweet afternoon break.

Ingredients
Method
- Prep your pan and oven. Heat the oven to 325°F (163°C). Line a mini muffin pan with paper liners. This helps the crust stay intact and the cheesecakes release cleanly.
- Make the crust. In a bowl, stir together 1 cup almond flour, 2 tablespoons granulated keto sweetener, a pinch of salt, and 3 tablespoons melted butter until the mixture looks like damp sand.
- Press the crust. Spoon about 1 teaspoon of crust mixture into each liner. Press firmly with the back of a measuring spoon to compact the crust evenly.
- Pre-bake. Bake the crusts for 5–7 minutes, until lightly golden around the edges. Let them cool slightly while you make the filling.
- Beat the cream cheese. In a mixing bowl, beat 16 ounces softened cream cheese until smooth and fluffy, about 1–2 minutes. Scrape the bowl to get rid of any lumps.
- Add sweetener and flavor. Beat in 1/2 cup granulated keto sweetener and 1 teaspoon vanilla extract until well combined. Add 1 teaspoon lemon zest if using.
- Blend in sour cream and eggs. Mix in 1/3 cup sour cream until smooth. Add 2 room-temperature eggs one at a time, mixing just until incorporated. Do not overbeat; too much air can cause cracks.
- Fill the cups. Divide the filling among the crusts, filling almost to the top. The batter will set and slightly puff, then settle as it cools.
- Bake gently. Bake for 14–18 minutes, until the edges are set and the centers are slightly jiggly. They should not brown. Overbaking dries them out.
- Cool slowly. Turn off the oven and prop the door open for 5 minutes. Then transfer the pan to a rack. Let the cheesecakes cool to room temperature.
- Chill to set. Refrigerate for at least 2 hours, preferably overnight. Chilling firms the texture and improves flavor.
- Top and serve. Add fresh berries or a dollop of whipped cream if you like. Keep portions simple to stay low-carb.
Why This Recipe Works

These mini cheesecakes cut out sugar and flour, but keep all the flavor. Almond flour and butter form a crisp, lightly sweet crust that pairs perfectly with the creamy filling. Using room-temperature ingredients keeps the texture silky and avoids lumps.
A brief chill in the fridge sets them up so they slice cleanly and taste even better the next day.
Shopping List
- Almond flour – for the crust
- Unsalted butter – melted, for binding the crust
- Granulated erythritol or allulose – your preferred keto sweetener
- Fine sea salt – just a pinch for balance
- Cream cheese – full-fat, softened
- Eggs – room temperature
- Sour cream – adds tang and a smooth finish
- Vanilla extract – for warmth and flavor
- Lemon zest (optional) – brightens the filling
- Fresh berries (optional, for topping) – raspberries, blueberries, or strawberries
- Mini muffin pan and paper liners – for easy release
Step-by-Step Instructions

- Prep your pan and oven. Heat the oven to 325°F (163°C). Line a mini muffin pan with paper liners. This helps the crust stay intact and the cheesecakes release cleanly.
- Make the crust. In a bowl, stir together 1 cup almond flour, 2 tablespoons granulated keto sweetener, a pinch of salt, and 3 tablespoons melted butter until the mixture looks like damp sand.
- Press the crust. Spoon about 1 teaspoon of crust mixture into each liner.
Press firmly with the back of a measuring spoon to compact the crust evenly.
- Pre-bake. Bake the crusts for 5–7 minutes, until lightly golden around the edges. Let them cool slightly while you make the filling.
- Beat the cream cheese. In a mixing bowl, beat 16 ounces softened cream cheese until smooth and fluffy, about 1–2 minutes. Scrape the bowl to get rid of any lumps.
- Add sweetener and flavor. Beat in 1/2 cup granulated keto sweetener and 1 teaspoon vanilla extract until well combined.
Add 1 teaspoon lemon zest if using.
- Blend in sour cream and eggs. Mix in 1/3 cup sour cream until smooth. Add 2 room-temperature eggs one at a time, mixing just until incorporated. Do not overbeat; too much air can cause cracks.
- Fill the cups. Divide the filling among the crusts, filling almost to the top.
The batter will set and slightly puff, then settle as it cools.
- Bake gently. Bake for 14–18 minutes, until the edges are set and the centers are slightly jiggly. They should not brown. Overbaking dries them out.
- Cool slowly. Turn off the oven and prop the door open for 5 minutes.
Then transfer the pan to a rack. Let the cheesecakes cool to room temperature.
- Chill to set. Refrigerate for at least 2 hours, preferably overnight. Chilling firms the texture and improves flavor.
- Top and serve. Add fresh berries or a dollop of whipped cream if you like.
Keep portions simple to stay low-carb.
Keeping It Fresh
Store the mini cheesecakes in an airtight container in the fridge for up to 5 days. Place a piece of parchment between layers to prevent sticking. For longer storage, freeze them on a sheet pan until solid, then transfer to a freezer bag.
They’ll keep well for 1–2 months. Thaw overnight in the fridge for the best texture.

Benefits of This Recipe
- Low in carbs, high in satisfaction. You get a classic dessert experience without sugar and with fewer net carbs.
- Built-in portion control. Mini size helps you manage servings without feeling deprived.
- Quick and flexible. The crust and filling come together fast, and toppings are easy to customize.
- Make-ahead friendly. They taste better after chilling, so you can prep them earlier in the week or before an event.
- Great for sharing. Mini treats travel well for potlucks, picnics, and holidays.
Pitfalls to Watch Out For
- Cold cream cheese. Using it straight from the fridge creates lumps. Let it sit out until fully softened.
- Overmixing the batter. Too much air leads to cracking and a spongy texture.
Mix just until combined.
- Overbaking. If the centers are fully set in the oven, they’re overdone. Pull them when they’re still slightly jiggly.
- Skipping the chill time. They need a cold rest to firm up. Rushing this step leads to messy bites and dull flavor.
- Sweetener swaps without thought. Different keto sweeteners vary in sweetness and texture.
Adjust to taste and avoid powdered sweeteners in the crust, which can make it pasty.
Recipe Variations
- Chocolate swirl. Melt a few squares of 90% dark chocolate or sugar-free chocolate and swirl a teaspoon into each cup before baking.
- Lemon bliss. Add 2 teaspoons lemon zest and 1 tablespoon lemon juice to the filling. Top with a thin slice of lemon after baking.
- Berry burst. Drop 1–2 raspberries or blueberries into each cup before baking for pockets of fruit.
- Spiced cinnamon crust. Add 1/2 teaspoon cinnamon to the almond flour crust for warmth and aroma.
- Nut-free crust. Swap almond flour for finely ground sunflower seed flour in equal measure.
- Espresso kick. Mix 1 teaspoon instant espresso powder into the filling for a mocha vibe.
- No-crust option. Skip the crust and bake the filling directly in liners for an ultra-light version. Reduce bake time slightly.
FAQ
Can I use a different keto sweetener?
Yes.
Erythritol and allulose both work well, but they differ in sweetness and texture. Allulose is less likely to crystallize and often gives a softer bite. Adjust the amount to taste and check the manufacturer’s conversion chart.
How do I prevent cracks?
Use room-temperature ingredients, don’t overmix, and bake at a moderate temperature.
Pull them when the centers still wobble slightly, cool gradually, and chill fully. You don’t need a water bath for minis if you avoid overbaking.
Can I make these in a standard muffin tin?
Absolutely. Line a regular muffin pan and increase the crust and filling amounts per cup.
Bake time will be longer, typically 18–22 minutes, but still remove them while the centers are slightly jiggly.
What if I don’t have sour cream?
Use Greek yogurt (full-fat) for a similar tang and texture. Mascarpone also works, though it makes the filling richer and slightly thicker.
Are these freezer-friendly?
Yes. Freeze them on a tray until solid, then store in a freezer bag for up to 2 months.
Thaw in the fridge overnight. Add toppings after thawing for the best look and texture.
How many net carbs are in each mini cheesecake?
It depends on your sweetener and toppings, but a typical mini cheesecake made as written lands around 2–3 net carbs each. If you add fruit, count those carbs accordingly.
Can I make them without liners?
You can, but liners make life easier.
If you skip them, grease the pan well and let the cheesecakes chill thoroughly before gently loosening with a thin knife.
Why is my crust crumbly?
It likely needs a touch more butter or firmer packing. Measure the almond flour correctly, melt the butter fully, and press the crust evenly so it binds as it bakes.
In Conclusion
Keto mini cheesecakes are a simple, reliable dessert that feels special without a lot of effort. The crust is crisp, the filling is creamy, and the portion size is spot-on. Keep a batch in the fridge for busy weeks, or dress them up with toppings for guests. Once you learn the rhythm—soften, mix gently, bake lightly, and chill—you’ll have a go-to keto treat every time the craving hits.


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